Motif View

Internal ID 17657591
Source Database TransTermHP TERM 1572
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1572
Sequence CCGCGCCTTCGAGCGCGG
Look for more occurrences
Start 6498092
End 6498109
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGGAATAAAAAAA(5' tail) CCGCGC(5' stem) TCGAAG(loop) GCGCGG(3' stem) CTCTTTTCGTTGTCG(3' tail). Confidence: 100. opp_overlap 6498091 6498089 6498092

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685