Motif View

Internal ID 17658853
Source Database TransTermHP TERM 658
Feature Type terminator
Name
Rho-independent transcription terminator TERM 658
Sequence GGCCGCATCCTCAGGCAGGTGCGGCC
Look for more occurrences
Start 2743728
End 2743753
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTTCAACCGTTTTG(5' tail) GGCCGCATCCT(5' stem) CAGGC(loop) AGG-TGCGGCC(3' stem) TTTTTTTGGGTGTTT(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685