Motif View

Internal ID 17660021
Source Database TransTermHP TERM 1020
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1020
Sequence TTCCCACAATATTGTGGGAA
Look for more occurrences
Start 4489990
End 4490009
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAACTCATAAGAAAA(5' tail) TTCCCACA(5' stem) ATAT(loop) TGTGGGAA(3' stem) TTTTCTTTTTCAAGC(3' tail). Confidence: 100. opp_overlap 4489990 4489985, overlap 4489985

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685