Motif View

Internal ID 17661820
Source Database TransTermHP TERM 928
Feature Type terminator
Name
Rho-independent transcription terminator TERM 928
Sequence CGCCGCCATCCGGACCTCCGGATGGCGGCG
Look for more occurrences
Start 4063052
End 4063081
Strand -
Genomic Context
Replicon Pseudomonas protegens Pf-5 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCCCCACGCAAAA(5' tail) CGCCGCCATCCGG(5' stem) AGGT(loop) CCGGATGGCGGCG(3' stem) AATGGGCACTGTCCC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685