Motif View

Internal ID 17664966
Source Database TransTermHP TERM 5
Feature Type terminator
Name
Rho-independent transcription terminator TERM 5
Sequence GGCTTGCTACGGCAAGCC
Look for more occurrences
Start 23769
End 23786
Strand -
Genomic Context
Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACTCGCTAAGAAAAA(5' tail) GGCTTGC(5' stem) CGTA(loop) GCAAGCC(3' stem) TTTGAGGTTCGGGAA(3' tail). Confidence: 100. opp_overlap 23769

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685