Motif View

Internal ID 17665251
Source Database TransTermHP TERM 483
Feature Type terminator
Name
Rho-independent transcription terminator TERM 483
Sequence CCCCGCTCCGGCGGGG
Look for more occurrences
Start 2222576
End 2222591
Strand -
Genomic Context
Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATTGAGCATAAAAAA(5' tail) CCCCGC(5' stem) CGGA(loop) GCGGGG(3' stem) TTTTTTATTGCCTTA(3' tail). Confidence: 100. opp_overlap 2222569 2222576

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685