Motif View

Internal ID 17666596
Source Database TransTermHP TERM 1362
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1362
Sequence GACCTGCACATGCAGGTC
Look for more occurrences
Start 4397929
End 4397946
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGCCATAAAAAAT(5' tail) GACCTGC(5' stem) ACAT(loop) GCAGGTC(3' stem) TTTTTTTTGCCTTCC(3' tail). Confidence: 100. opp_overlap 4397929 4397928

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685