Motif View

Internal ID 17666828
Source Database TransTermHP TERM 1652
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1652
Sequence GGCCGCTGATTTTCAGCGGCC
Look for more occurrences
Start 5265180
End 5265200
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCGTCGTCCTTGCA(5' tail) GGCCGCTGA(5' stem) TTT(loop) TCAGCGGCC(3' stem) TTTTTTCGTTGTGGT(3' tail). Confidence: 100. overlap 5265169 5265167

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685