Motif View

Internal ID 17668028
Source Database TransTermHP TERM 145
Feature Type terminator
Name
Rho-independent transcription terminator TERM 145
Sequence GATGCCCTCAAAAGAGGGCATC
Look for more occurrences
Start 408854
End 408875
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTAAGGCCAAATAAA(5' tail) GATGCCCTC(5' stem) TTTT(loop) GAGGGCATC(3' stem) TTTACACTATCAAGA(3' tail). Confidence: 100. opp_overlap 408854, overlap 408850

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685