Motif View

Internal ID 17669920
Source Database TransTermHP TERM 38
Feature Type terminator
Name
Rho-independent transcription terminator TERM 38
Sequence CCGCTGCTCCGGTTACGGGCAGCGG
Look for more occurrences
Start 166539
End 166563
Strand -
Genomic Context
Replicon Pseudomonas fulva 12-X chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGCAATAAAAAA(5' tail) CCGCTGC-CCG(5' stem) TAAC(loop) CGGAGCAGCGG(3' stem) TTTTTTTATGCGCGA(3' tail). Confidence: 100. gap 1, opp_overlap 166524 166539

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685