Motif View

Internal ID 17670757
Source Database TransTermHP TERM 1287
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1287
Sequence CCGCGCATCGCGCGG
Look for more occurrences
Start 4143108
End 4143122
Strand -
Genomic Context
Replicon Pseudomonas fulva 12-X chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGGCAATAAAAAA(5' tail) CCGCGC(5' stem) GAT(loop) GCGCGG(3' stem) TTCTTGGAAACGCCT(3' tail). Confidence: 100. opp_overlap 4143108

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685