Motif View

Internal ID 17672270
Source Database TransTermHP TERM 571
Feature Type terminator
Name
Rho-independent transcription terminator TERM 571
Sequence CGGTCAACCGGCCG
Look for more occurrences
Start 2593903
End 2593916
Strand +
Genomic Context Located within gene kefC
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGCGTGTGTGACGC(5' tail) CGGTC(5' stem) AACC(loop) GGCCG(3' stem) TTTTTTCCGTTTCGT(3' tail). Confidence: 90. overlap 2593901 2593900

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685