Motif View

Internal ID 17672535
Source Database TransTermHP TERM 956
Feature Type terminator
Name
Rho-independent transcription terminator TERM 956
Sequence CGCCCCGCACCGACGGGGCG
Look for more occurrences
Start 5023382
End 5023401
Strand -
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCGGAAAAGAAAA(5' tail) CGCCCCG(5' stem) TCGGTG(loop) CGGGGCG(3' stem) TTTATTGGGTCTGTT(3' tail). Confidence: 100. opp_overlap 5023382

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685