Motif View

Internal ID 17672811
Source Database TransTermHP TERM 1322
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1322
Sequence GCGCGGCGTGTCAGCCGCGC
Look for more occurrences
Start 6375981
End 6376000
Strand -
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TACAGACAAAAAAAA(5' tail) GCGCGGC(5' stem) TGACAC(loop) GCCGCGC(3' stem) TTTTTTCTGTCATGA(3' tail). Confidence: 100. opp_overlap 6375981 6375961, overlap 6375972

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685