Motif View

Internal ID 17675066
Source Database TransTermHP TERM 283
Feature Type terminator
Name
Rho-independent transcription terminator TERM 283
Sequence GCCGGTACTGGCAACACAAATACCGGC
Look for more occurrences
Start 1186414
End 1186440
Strand -
Genomic Context
Replicon Pseudomonas putida BIRD-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGACAGTAAAAAAA(5' tail) GCCGGTATTTG(5' stem) TGTTG(loop) CCAGTACCGGC(3' stem) CTCTTCGCGGGTAAA(3' tail). Confidence: 93. opp_overlap 1186413

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685