Motif View

Internal ID 17675306
Source Database TransTermHP TERM 705
Feature Type terminator
Name
Rho-independent transcription terminator TERM 705
Sequence TAGGGGAAGAGCCTTCAAAGCTCTTCCCCTA
Look for more occurrences
Start 3597116
End 3597146
Strand -
Genomic Context
Replicon Pseudomonas putida BIRD-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCCAGATACGAAAA(5' tail) TAGGGGAAGAGCTT(5' stem) TGA(loop) AGGCTCTTCCCCTA(3' stem) TCGATGACGTTCAAT(3' tail). Confidence: 100. opp_overlap 3597126

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685