Motif View

Internal ID 17676254
Source Database TransTermHP TERM 1056
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1056
Sequence GCCCCGCTTCGGCGGGGC
Look for more occurrences
Start 4629304
End 4629321
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa M18 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGGACAAAGAAAA(5' tail) GCCCCGC(5' stem) CGAA(loop) GCGGGGC(3' stem) CTTCCTTGCACGCAG(3' tail). Confidence: 100. opp_overlap 4629304 4629303, overlap 4629299

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685