Motif View

Internal ID 17677904
Source Database TransTermHP TERM 461
Feature Type terminator
Name
Rho-independent transcription terminator TERM 461
Sequence GCCCGGCATAGACCGGGC
Look for more occurrences
Start 2058711
End 2058728
Strand +
Genomic Context
Replicon Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTTCAAGCTCGAAAA(5' tail) GCCCGG(5' stem) CATAGA(loop) CCGGGC(3' stem) TTTTCTTTGCCTGCA(3' tail). Confidence: 100. opp_overlap 2058711, overlap 2058706

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685