Motif View

Internal ID 17679119
Source Database TransTermHP TERM 402
Feature Type terminator
Name
Rho-independent transcription terminator TERM 402
Sequence CAGCCGGGCCCAGTGTCCGGCTG
Look for more occurrences
Start 1768247
End 1768269
Strand +
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATGCGGTAACAGATC(5' tail) CAGCCGGGC(5' stem) CCAGT(loop) GTCCGGCTG(3' stem) TTTTATTTTACGGCT(3' tail). Confidence: 100. opp_overlap 1768245

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685