Motif View

Internal ID 17680986
Source Database TransTermHP TERM 185
Feature Type terminator
Name
Rho-independent transcription terminator TERM 185
Sequence GCCGGCGTTATTGCCGGC
Look for more occurrences
Start 613380
End 613397
Strand +
Genomic Context
Replicon Pseudomonas putida HB3267, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACTGATCGAATGAA(5' tail) GCCGGCG(5' stem) TTAT(loop) TGCCGGC(3' stem) TTTTTTGTATGCCTG(3' tail). Confidence: 100. opp_overlap 613380

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685