Motif View

Internal ID 17683755
Source Database TransTermHP TERM 1539
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1539
Sequence GCCCGGTCTTCGCCCGGGC
Look for more occurrences
Start 6354480
End 6354498
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCCCTGGAAAAA(5' tail) GCCCGGTC(5' stem) TTC(loop) GCCCGGGC(3' stem) TTTTTCGTTTCCGGC(3' tail). Confidence: 100. opp_overlap 6354480

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685