Motif View

Internal ID 17684808
Source Database TransTermHP TERM 79
Feature Type terminator
Name
Rho-independent transcription terminator TERM 79
Sequence GGCCCGTCGTCTGACGGGCC
Look for more occurrences
Start 413179
End 413198
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTGAGACGAAAAAA(5' tail) GGCCCGTC(5' stem) AGAC(loop) GACGGGCC(3' stem) AAAGATTTACCGCAA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685