Motif View

Internal ID 17685395
Source Database TransTermHP TERM 965
Feature Type terminator
Name
Rho-independent transcription terminator TERM 965
Sequence CCCCGCCTCGGCGGGG
Look for more occurrences
Start 4516833
End 4516848
Strand +
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGCTCTGAAGAAA(5' tail) CCCCGC(5' stem) CTCG(loop) GCGGGG(3' stem) TTTTTCGTTTTCGCT(3' tail). Confidence: 100. opp_overlap 4516833, overlap 4516826

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685