Motif View

Internal ID 17685411
Source Database TransTermHP TERM 1
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1
Sequence GGCCAACGCATGAGCGTTGGCC
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Start 6623
End 6644
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCGCCATACAAAA(5' tail) GGCCAACGC(5' stem) TCAT(loop) GCGTTGGCC(3' stem) TTTTTATTTGTTGAG(3' tail). Confidence: 100. opp_overlap 6623

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685