Motif View

Internal ID 17685415
Source Database TransTermHP TERM 5
Feature Type terminator
Name
Rho-independent transcription terminator TERM 5
Sequence CCGGCTATATCAGCCGG
Look for more occurrences
Start 6818
End 6834
Strand +
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACAGGCATAAAAAAA(5' tail) CCGGCT(5' stem) ATATC(loop) AGCCGG(3' stem) TTTTTTTACGTCCGA(3' tail). Confidence: 100. opp_overlap 6818 6806 6804

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685