Motif View

Internal ID 17685880
Source Database TransTermHP TERM 636
Feature Type terminator
Name
Rho-independent transcription terminator TERM 636
Sequence CCCCATGATCGCTCATGGGG
Look for more occurrences
Start 2823994
End 2824013
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGAAAACACAAAA(5' tail) CCCCATGA(5' stem) GCGA(loop) TCATGGGG(3' stem) TTTTTTGTGTCTTGC(3' tail). Confidence: 100. opp_overlap 2823994 2823987, overlap 2823987

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685