Motif View

Internal ID 17686494
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence CCGGCTCCAAGGCCGG
Look for more occurrences
Start 13532
End 13547
Strand +
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCAGGTGAAAAAAA(5' tail) CCGGCT(5' stem) CCAA(loop) GGCCGG(3' stem) TTTTTTTGTCTGCTG(3' tail). Confidence: 100. opp_overlap 13532

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685