Motif View

Internal ID 17688528
Source Database TransTermHP TERM 82
Feature Type terminator
Name
Rho-independent transcription terminator TERM 82
Sequence GGCCCGCGCAAGCGGGCC
Look for more occurrences
Start 278792
End 278809
Strand +
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGGTTCAAAAGAA(5' tail) GGCCCGC(5' stem) GCAA(loop) GCGGGCC(3' stem) TTTTCTTTTCCGGGC(3' tail). Confidence: 100. opp_overlap 278792

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685