Motif View

Internal ID 17688530
Source Database TransTermHP TERM 84
Feature Type terminator
Name
Rho-independent transcription terminator TERM 84
Sequence CGCCGCTGCCCTTGCGGGGAGCGGCG
Look for more occurrences
Start 278887
End 278912
Strand +
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGGGCATGAAAAA(5' tail) CGCCGCTGCCC(5' stem) TTGC(loop) GGGGAGCGGCG(3' stem) TTTCTCAGGGTGGCG(3' tail). Confidence: 95. opp_overlap 278887

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685