Motif View

Internal ID 17688841
Source Database TransTermHP TERM 534
Feature Type terminator
Name
Rho-independent transcription terminator TERM 534
Sequence GCGCGCCGATTGGCGCGC
Look for more occurrences
Start 1706405
End 1706422
Strand +
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCTGCATGAAAAA(5' tail) GCGCGCC(5' stem) GATT(loop) GGCGCGC(3' stem) TTTTTCTTTGGGGTG(3' tail). Confidence: 100. opp_overlap 1706405, overlap 1706399

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685