Motif View

Internal ID 17688843
Source Database TransTermHP TERM 537
Feature Type terminator
Name
Rho-independent transcription terminator TERM 537
Sequence GCCACTCTTAGGAGTGGC
Look for more occurrences
Start 1711489
End 1711506
Strand -
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGCAACGAAAAAA(5' tail) GCCACTC(5' stem) CTAA(loop) GAGTGGC(3' stem) TTTCTTCTTGATGTC(3' tail). Confidence: 100. opp_overlap 1711489 1711482

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685