Pseudomonas putida BIRD-1

Strain Overview
Organism Name Pseudomonas putida BIRD-1
Species Pseudomonas putida
Strain BIRD-1
Description/Title Sample from Pseudomonas putida BIRD-1
Annotated Genes 5046
Partial Genes
Host Information
Geographic Location
Isolation Source soil

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
argS
~12
argS
~12
rpoD
2
recA
5
ileS
7
nuoC
60
gyrB
46
ppsA
8
rpoB
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603225
NCBI Taxonomy ID 931281
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas putida BIRD-1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5046
CDS 4960
tRNA 64
rRNA 22

Subcellular Localization

Localization Count
Cytoplasmic 2268
Cytoplasmic Membrane 1180
Periplasmic 157
Outer Membrane 138
Extracellular 31
Unknown 1057
Unknown (This protein may have multiple localization sites) 129
Flagellar 16
Fimbrial 2

Replicons

Name Length GC
Pseudomonas putida BIRD-1 chromosome, complete genome. 5731541 bp 61.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs