Pseudomonas aeruginosa PAO1, PA0078 (tssL1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Hcp secretion island I (HSI-I) type VI secretion system ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF09850 Type VI secretion system protein DotU IPR017732 Type IV / VI secretion system, DotU 67 269 9.0E-68
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 328 443 7.98E-29
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 339 437 2.1E-14
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 295 449 1.0E-42
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 339 443 2.22169E-34
MobiDBLite mobidb-lite consensus disorder prediction - - 1 57 -
NCBIfam TIGR03350 JCVI: type VI secretion system protein TssL C-terminal extension domain IPR017733 Type VI secretion system, OmpA-like domain, proteobacteria 307 443 1.1E-52
NCBIfam NF038228 NCBIFAM: type IVB secretion system protein IcmH/DotU - - 65 281 2.7E-49
Gene3D G3DSA:1.25.40.590 Type IV / VI secretion system, DotU IPR038522 Type IV / VI secretion system, DotU superfamily 63 221 1.2E-49
NCBIfam TIGR03349 JCVI: DotU/TssL family secretion system protein IPR017732 Type IV / VI secretion system, DotU 66 275 4.2E-72
PANTHER PTHR38033 MEMBRANE PROTEIN-RELATED - - 57 285 9.5E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.