Pseudomonas aeruginosa PAO1, PA0083 (tssB1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pae02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| PseudoCAP | Hcp secretion island I (HSI-I) type VI secretion system |
ECO:0000037
not_recorded |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PIRSF | PIRSF028301 | UCP028301 | IPR008312 | Type VI secretion system sheath protein TssB1 | 3 | 172 | 7.7E-59 |
| PANTHER | PTHR35850 | CYTOPLASMIC PROTEIN-RELATED | IPR008312 | Type VI secretion system sheath protein TssB1 | 4 | 169 | 1.6E-69 |
| NCBIfam | TIGR03358 | JCVI: type VI secretion system contractile sheath small subunit | IPR008312 | Type VI secretion system sheath protein TssB1 | 8 | 163 | 1.5E-55 |
| Pfam | PF05591 | Type VI secretion system, VipA, VC_A0107 or Hcp2 | IPR008312 | Type VI secretion system sheath protein TssB1 | 12 | 162 | 2.1E-57 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.