Pseudomonas aeruginosa PAO1, PA0933 (ygcA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01010
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.1070 - - - 145 282 1.3E-112
MobiDBLite mobidb-lite consensus disorder prediction - - 1 22 -
FunFam G3DSA:3.40.50.150:FF:000009 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD - - 270 444 4.4E-57
NCBIfam TIGR00479 JCVI: 23S rRNA (uracil-5-)-methyltransferase RlmD - - 272 442 1.5E-58
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase IPR010280 (Uracil-5)-methyltransferase family 109 446 3.9E-25
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 17 74 9.71E-11
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 19 97 1.3E-16
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 98 444 1.3E-112
PANTHER PTHR11061 RNA M5U METHYLTRANSFERASE IPR010280 (Uracil-5)-methyltransferase family 271 448 1.9E-85
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 86 448 6.58E-77
CDD cd02440 AdoMet_MTases - - 307 394 2.93927E-12
Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 28 450 66.544991
FunFam G3DSA:2.40.50.140:FF:000458 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD - - 19 97 4.0E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.