Pseudomonas aeruginosa PAO1, PA1444 (fliN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006935 chemotaxis
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006928 movement of cell or subcellular component
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0071973 bacterial-type flagellum-dependent cell motility
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009425 bacterial-type flagellum basal body
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003774 motor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009288 bacterial-type flagellum
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Motility & Attachment Other PAO1 genes in this class
Chemotaxis Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Flagella assembly ECO:0000037
not_recorded
KEGG pae02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.330.10 - IPR036429 SpoA-like superfamily 70 157 6.4E-31
PANTHER PTHR43484 - - - 37 157 1.1E-35
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 94 110 2.6E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 110 123 2.6E-28
Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPR001543 Flagellar motor switch protein FliN-like, C-terminal domain 78 147 4.3E-25
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 123 138 2.6E-28
NCBIfam TIGR02480 JCVI: flagellar motor switch protein FliN IPR012826 Flagellar motor switch FliN 74 149 1.1E-32
FunFam G3DSA:2.30.330.10:FF:000001 Flagellar motor switch protein FliN - - 66 157 8.3E-50
MobiDBLite mobidb-lite consensus disorder prediction - - 24 67 -
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 77 93 2.6E-28
SUPERFAMILY SSF101801 Surface presentation of antigens (SPOA) IPR036429 SpoA-like superfamily 74 155 1.2E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.