Pseudomonas aeruginosa PAO1, PA2518 (xylX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015976 carbon utilization
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0044248 cellular catabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Aromatic compound catabolism ECO:0000037
not_recorded
KEGG pae01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00622 Xylene degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00364 Fluorobenzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 189 211 6.1E-46
Pfam PF00355 Rieske [2Fe-2S] domain IPR017941 Rieske [2Fe-2S] iron-sulphur domain 45 129 1.3E-20
Gene3D G3DSA:2.102.10.10 - IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily 45 172 9.4E-102
CDD cd08879 RHO_alpha_C_AntDO-like - - 194 434 4.93461E-87
PANTHER PTHR43756 CHOLINE MONOOXYGENASE, CHLOROPLASTIC IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 6 442 9.8E-71
NCBIfam TIGR03229 JCVI: benzoate 1,2-dioxygenase large subunit IPR017639 Benzoate 1,2-dioxygenase, large subunit 9 438 0.0
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 60 75 6.1E-46
CDD cd03542 Rieske_RO_Alpha_HBDO - - 46 168 1.34621E-90
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 102 122 6.1E-46
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 30 55 6.1E-46
SUPERFAMILY SSF55961 Bet v1-like - - 164 445 1.33E-70
Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain 196 385 2.7E-18
SUPERFAMILY SSF50022 ISP domain IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily 11 164 9.56E-45
Gene3D G3DSA:3.90.380.10 - - - 23 395 9.4E-102
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 81 101 6.1E-46
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 148 174 6.1E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.