Pseudomonas aeruginosa PAO1, PA3140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region IPR004509 Competence protein ComEA, helix-hairpin-helix domain 44 108 9.1E-21
SUPERFAMILY SSF47781 IPR010994 RuvA domain 2-like 34 107 4.78E-24
SMART SM00278 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 86 105 20.0
Pfam PF12836 Helix-hairpin-helix motif 44 106 5.9E-20
Gene3D G3DSA:1.10.150.320 28 106 2.5E-17
SMART SM00278 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 56 75 2.7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.