Pseudomonas aeruginosa PAO1, PA3140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12836 Helix-hairpin-helix motif - - 44 106 8.5E-20
PANTHER PTHR21180 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 - - 29 108 1.7E-18
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 86 105 20.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 56 75 2.7
Gene3D G3DSA:1.10.150.320 Photosystem II 12 kDa extrinsic protein - - 28 106 7.5E-17
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 34 107 4.78E-24
NCBIfam TIGR00426 JCVI: competence protein ComEA helix-hairpin-helix repeat region IPR004509 Competence protein ComEA, helix-hairpin-helix domain 44 108 3.1E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.