Pseudomonas aeruginosa PAO1, PA3626

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 13 342 1.87E-94
CDD cd02575 PseudoU_synth_EcTruD - - 22 341 7.24357E-125
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 189 340 1.3E-17
PANTHER PTHR47811 TRNA PSEUDOURIDINE SYNTHASE D - - 7 350 0.0
Hamap MF_01082 tRNA pseudouridine synthase D [truD]. IPR001656 Pseudouridine synthase, TruD 9 345 27.042028
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 23 172 9.7E-39
Gene3D G3DSA:3.30.2340.10 TruD, insertion domain IPR043165 Pseudouridine synthase, TruD, insertion domain superfamily 172 304 8.7E-107
Gene3D G3DSA:3.30.2350.20 TruD, catalytic domain IPR042214 Pseudouridine synthase, TruD, catalytic domain 21 340 8.7E-107

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.