Pseudomonas aeruginosa PAO1, PA3743 (trmD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0030488 tRNA methylation
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 6337136 Reviewed by curator
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1270.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0052906 tRNA (guanine(37)-N(1))-methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1270.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01746 tRNA (Guanine-1)-methyltransferase IPR016009 tRNA methyltransferase TRMD/TRM10-type domain 27 225 1.8E-64
PANTHER PTHR46417 TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE IPR002649 tRNA (guanine-N1-)-methyltransferase TrmD 6 248 1.6E-104
Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. IPR002649 tRNA (guanine-N1-)-methyltransferase TrmD 1 252 114.841026
CDD cd18080 TrmD-like IPR002649 tRNA (guanine-N1-)-methyltransferase TrmD 9 225 0.0
NCBIfam TIGR00088 JCVI: tRNA (guanosine(37)-N1)-methyltransferase TrmD IPR002649 tRNA (guanine-N1-)-methyltransferase TrmD 5 234 2.7E-97
FunFam G3DSA:3.40.1280.10:FF:000001 tRNA (guanine-N(1)-)-methyltransferase - - 5 170 4.1E-73
FunFam G3DSA:1.10.1270.20:FF:000001 tRNA (guanine-N(1)-)-methyltransferase - - 171 250 4.5E-38
PIRSF PIRSF000386 tRNA_mtase IPR002649 tRNA (guanine-N1-)-methyltransferase TrmD 5 250 1.4E-97
Gene3D G3DSA:3.40.1280.10 - IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal 3 170 1.4E-76
SUPERFAMILY SSF75217 alpha/beta knot IPR029028 Alpha/beta knot methyltransferases 5 249 3.4E-98
Gene3D G3DSA:1.10.1270.20 tRNA(m1g37)methyltransferase, domain 2 IPR023148 tRNA (guanine-N(1)-)-methyltransferase, C-terminal domain superfamily 171 252 6.9E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.