Pseudomonas aeruginosa PAO1, PA4052 (nusB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0031554 regulation of DNA-templated transcription, termination
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 10383769 Reviewed by curator
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006353 DNA-templated transcription, termination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11078
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11078 N UTILIZATION SUBSTANCE PROTEIN B-RELATED IPR011605 NusB antitermination factor 61 148 1.2E-23
SUPERFAMILY SSF48013 NusB-like IPR035926 NusB-like superfamily 19 150 3.14E-43
FunFam G3DSA:1.10.940.10:FF:000001 Transcription antitermination factor NusB - - 16 153 1.4E-61
NCBIfam TIGR01951 JCVI: transcription antitermination factor NusB IPR011605 NusB antitermination factor 21 147 1.4E-43
Pfam PF01029 NusB family IPR006027 NusB/RsmB/TIM44 22 146 1.1E-32
MobiDBLite mobidb-lite consensus disorder prediction - - 1 21 -
Gene3D G3DSA:1.10.940.10 - IPR035926 NusB-like superfamily 16 153 7.4E-44
Hamap MF_00073 Transcription antitermination protein NusB [nusB]. IPR011605 NusB antitermination factor 19 150 22.444691
CDD cd00619 Terminator_NusB - - 21 147 2.86196E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.