Pseudomonas aeruginosa PAO1, PA4147 (acoR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 321 559 4.37E-60
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 598 618 3.3E-7
Gene3D G3DSA:1.10.8.60 - - - 490 565 5.2E-15
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 317 488 1.1E-64
Gene3D G3DSA:1.10.10.60 - - - 578 617 6.5E-10
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 528 617 4.98E-9
SUPERFAMILY SSF55781 GAF domain-like - - 69 212 6.21E-10
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 337 481 1.4E-14
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 579 614 5.4E-8
Pfam PF01590 GAF domain IPR003018 GAF domain 77 203 4.5E-8
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 305 489 3.1E-57
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 20 211 3.8E-50
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 581 598 3.3E-7
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 322 480 9.4E-62
CDD cd00009 AAA - - 323 488 3.95894E-25
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 126 619 3.3E-109

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.