Pseudomonas aeruginosa PAO1, PA5438

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1901135 carbohydrate derivative metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS51464
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01418
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01418
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0097367 carbohydrate derivative binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS51464
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53697 84 278 2.43E-37
CDD cd05013 SIS_RpiR IPR035472 RpiR-like, SIS domain 117 253 2.50922E-42
ProSiteProfiles PS51071 RpiR-type HTH domain profile. IPR000281 Helix-turn-helix protein RpiR 1 77 22.76
Gene3D G3DSA:3.40.50.10490 93 274 4.4E-39
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 1 79 4.1E-27
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 1 76 1.0E-20
Pfam PF01418 Helix-turn-helix domain, rpiR family IPR000281 Helix-turn-helix protein RpiR 1 76 7.1E-25
ProSitePatterns PS00356 LacI-type HTH domain signature. 37 55 -
ProSiteProfiles PS51464 SIS domain profile. IPR001347 Sugar isomerase (SIS) 121 260 18.317
Pfam PF01380 SIS domain IPR001347 Sugar isomerase (SIS) 125 252 8.1E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.