Pseudomonas aeruginosa UCBPP-PA14, PA14_00400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 6 93 1.6E-25
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 89 3.8E-26
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 93 299 1.7E-35
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 97 300 2.53E-36
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 10 299 1.6E-72
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 25 36 7.1E-11
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 86 5.67E-24
NCBIfam TIGR03418 JCVI: putative choline sulfate-utilization transcription factor IPR017786 Transcription factor, choline sulphate-utilisation, putative 8 298 0.0
Gene3D G3DSA:3.40.190.10 - - - 166 268 7.1E-47
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 57 7.1E-11
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 10 69 6.1E-24
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 36 46 7.1E-11
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like - - 97 295 4.57799E-57
Gene3D G3DSA:3.40.190.10 - - - 103 295 7.1E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.