Pseudomonas aeruginosa UCBPP-PA14, PA14_02910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 6 55 3.7E-17
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 123 250 1.1E-17
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 71 7.1E-20
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 72 256 2.2E-42
FunFam G3DSA:3.30.450.40:FF:000084 IclR family transcriptional regulator - - 72 256 1.9E-111
SUPERFAMILY SSF55781 GAF domain-like - - 70 251 1.63E-38
FunFam G3DSA:1.10.10.10:FF:000056 IclR family transcriptional regulator - - 2 73 3.1E-22
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 2 93 6.7E-20
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 6 255 7.9E-56
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 76 1.6E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.