Pseudomonas aeruginosa UCBPP-PA14, PA14_37120

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.290 - - - 86 290 8.2E-59
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 1.9E-22
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 290 3.8E-41
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 87 294 6.88E-43
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 111 8.52E-21
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 6 62 6.5E-18
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 5 291 1.1E-76
Coils Coil Coil - - 23 43 -
CDD cd08422 PBP2_CrgA_like - - 91 287 1.45196E-72
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 85 2.2E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.