Pseudomonas aeruginosa UCBPP-PA14, PA14_47820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 85 204 3.7E-28
SMART SM00345 IPR000524 Transcription regulator HTH, GntR 17 75 3.9E-14
Gene3D G3DSA:1.20.120.530 IPR008920 Transcription regulator FadR/GntR, C-terminal 81 219 2.3E-34
ProSiteProfiles PS50949 GntR-type HTH domain profile. IPR000524 Transcription regulator HTH, GntR 11 78 17.178
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 15 75 6.6E-16
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 11 76 4.1E-18
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 12 76 5.00082E-15
SUPERFAMILY SSF48008 IPR008920 Transcription regulator FadR/GntR, C-terminal 82 215 9.42E-28
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 12 79 8.52E-18
SMART SM00895 IPR011711 GntR, C-terminal 85 206 1.9E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.