Pseudomonas protegens Pf-5, PFL_1855 (thrH)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfl01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl00680 | Methane metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01488 | JCVI: HAD-IB family phosphatase | - | - | 5 | 160 | 6.4E-12 |
| Gene3D | G3DSA:3.90.1470.10 | thrh gene product, domain 2 | - | - | 13 | 128 | 1.6E-89 |
| Pfam | PF12710 | haloacid dehalogenase-like hydrolase | - | - | 66 | 160 | 1.6E-9 |
| SUPERFAMILY | SSF56784 | HAD-like | IPR036412 | HAD-like superfamily | 2 | 186 | 1.43E-44 |
| NCBIfam | TIGR02137 | JCVI: bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH | IPR011863 | Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein | 1 | 202 | 5.3E-116 |
| Gene3D | G3DSA:3.40.50.1000 | - | IPR023214 | HAD superfamily | 3 | 191 | 1.6E-89 |
| PANTHER | PTHR43344 | PHOSPHOSERINE PHOSPHATASE | - | - | 31 | 171 | 4.2E-16 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.