Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3969

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a3969
Name
Replicon chromosome
Genomic location 4880316 - 4881062 (+ strand)

Cross-References

RefSeq YP_004355368.1
GI 330810906
Entrez 10473104
INSDC AEA70364.1
NCBI Locus Tag PSEBR_a3969
UniParc UPI0002040CF5
UniProtKB Acc F2KJY8
UniProtKB ID F2KJY8_PSEBN
UniRef100 UniRef100_A0A0D0R8X7
UniRef50 UniRef50_K4R714
UniRef90 UniRef90_S6JV82

Product

Feature Type CDS
Coding Frame 1
Product Name
short chain dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -4.76
Kyte-Doolittle Hydrophobicity Value 0.216
Molecular Weight (kDa) 25.1
Isoelectric Point (pI) 4.71

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000180 (2706 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a3969

Human Homologs

Ensembl 97, assembly GRCh38.p12
dehydrogenase/reductase 4 [Source:HGNC Symbol;Acc:HGNC:16985]
E-value: 1.3e-25
Percent Identity: 35.5
Ensembl 97, assembly GRCh38.p12
dehydrogenase/reductase 4 [Source:HGNC Symbol;Acc:HGNC:16985]
E-value: 1.3e-25
Percent Identity: 35.5

References

No references are associated with this feature.