Pseudomonas aeruginosa PAO1, PA0533

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06170
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 426 482 4.21573E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 136 251 2.79E-14
SMART SM00091 pas_2 IPR000014 PAS domain 142 209 0.063
Pfam PF13426 PAS domain IPR000014 PAS domain 283 377 1.1E-6
Pfam PF13426 PAS domain IPR000014 PAS domain 159 251 4.3E-4
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 416 485 2.28E-20
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 255 377 1.15E-14
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 426 480 5.7E-18
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 140 262 5.6E-13
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 426 440 2.1E-11
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 456 468 2.1E-11
Pfam PF13188 PAS domain IPR000014 PAS domain 14 68 8.8E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 140 252 2.9E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 254 376 7.7E-16
Coils Coil Coil - - 255 275 -
CDD cd00130 PAS IPR000014 PAS domain 153 252 7.23171E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 263 386 3.7E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 6 139 5.4E-10
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 423 480 3.8E-24
PANTHER PTHR43214 TWO-COMPONENT RESPONSE REGULATOR IPR039420 Transcriptional regulatory protein WalR-like 4 484 2.7E-47
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 400 483 1.9E-24
CDD cd00130 PAS IPR000014 PAS domain 287 376 2.39237E-4
SMART SM00091 pas_2 IPR000014 PAS domain 267 336 0.033
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 10 135 4.54E-7
SMART SM00091 pas_2 IPR000014 PAS domain 13 84 0.074
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 440 456 2.1E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.